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dipetkov / eems

Estimating Effective Migration Surfaces
GNU General Public License v2.0
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Question on karyotype #46

Closed RenzoTale88 closed 3 years ago

RenzoTale88 commented 3 years ago

Good day, I'm writing you because I've got an issue with processing a dataset with eems. I have to analyse a dataset of livestock with a number of chromosomes larger than the human karyotype. This creates a problem with libplinkio, which cannot calculate the difference matrix from my bed file. Is there a way to work around the problem? For example, converting the chromosome number to 0 will somehow affect the results? Thank you in advance for your help Andrea

RenzoTale88 commented 3 years ago

Sorry my bad I was making a mistake in the command line and data preparation. Apologies for the non-issue!