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dipetkov / eems

Estimating Effective Migration Surfaces
GNU General Public License v2.0
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Problems to run bed2diffs #58

Open Ferxengutta opened 2 years ago

Ferxengutta commented 2 years ago

Dear authors

I tried to run the bed2diffs for calculate distances, but I have an error,

"Make sure that plink can process the dataset without non-standard input options such as --allow-extra-chr which indicates that the data contains unrecognized chromosome codes"

But I do not have the conventional chromosome because I am working with a non-model specie of fish, so if I do not have the common chromosome name I can run bed2diffs?

Wishes

redgcko7 commented 2 years ago

I have this same problem. OP, were you able to resolve this?

redgcko7 commented 2 years ago

I found the solution in a closed issue (issue #15): https://github.com/dipetkov/eems/issues/15