Briefly describe the feature and provide meaningful references
AutoGVP memory usage can be improved by filtering annotation files in addition to VCF file in filter_vcf.sh. These filtered files can be loaded in place of full annotation files by 01-annotate_variants_CAVATICA_input.R or 01-annotate_variants_custom_input.R
What input data are required for this feature or analysis?
VCF, multianno, intervar, and autopvs1 files
How do you plan to organise the feature or analysis - will it be a multi-function call or add to existing functions?
Additional code will be added to the filter_vcf.sh file to grep filter multianno, intervar, and autopvs1 files based on variant positions in filtered vcf file.
Who will complete the feature request (please add a GitHub handle here if relevant)?
Purpose/implementation Section
Briefly describe the feature and provide meaningful references
AutoGVP memory usage can be improved by filtering annotation files in addition to VCF file in
filter_vcf.sh. These filtered files can be loaded in place of full annotation files by01-annotate_variants_CAVATICA_input.Ror01-annotate_variants_custom_input.RWhat input data are required for this feature or analysis?
VCF, multianno, intervar, and autopvs1 files
How do you plan to organise the feature or analysis - will it be a multi-function call or add to existing functions?
Additional code will be added to the
filter_vcf.shfile to grep filter multianno, intervar, and autopvs1 files based on variant positions in filtered vcf file.Who will complete the feature request (please add a GitHub handle here if relevant)?
@rjcorb