Briefly describe the feature and provide meaningful references
All variant classifications are currently being considered separately when identifying consensus calls from clinVar submissions. But this can be improved by merging P and LP, and B and LB, calls and then identifying a majority call.
What input data are required for this feature or analysis?
ClinVar variant and submissions summary files
How do you plan to organise the feature or analysis - will it be a multi-function call or add to existing functions?
Will modify code in select-clinVar-submissions.R to first create a new column that groups P/LP and B/LB together, then count based on this column.
Who will complete the feature request (please add a GitHub handle here if relevant)?
Purpose/implementation Section
Briefly describe the feature and provide meaningful references
All variant classifications are currently being considered separately when identifying consensus calls from clinVar submissions. But this can be improved by merging P and LP, and B and LB, calls and then identifying a majority call.
What input data are required for this feature or analysis?
ClinVar variant and submissions summary files
How do you plan to organise the feature or analysis - will it be a multi-function call or add to existing functions?
Will modify code in
select-clinVar-submissions.Rto first create a new column that groups P/LP and B/LB together, then count based on this column.Who will complete the feature request (please add a GitHub handle here if relevant)?
@rjcorb