Briefly descibe the feature and provide meaningful references
Add column clinvar_review_status_autogvp that will include description of how variants with conflicting interpretation were resolved (e.g., "criteria_provided,_conflicting_interpretations, consensus call taken"
What input data are required for this feature or analysis?
ClinVar variant and submission summary files
How do you plan to organise the feature or analysis - will it be a multi-function call or add to existing functions?
This will require modifications to select-clinVar-submission.R, annotate_variants_*_input.R, and 04-filter_gene_annotations.R.
Who will complete the feature request (please add a GitHub handle here if relevant)?
Purpose/implementation Section
Briefly descibe the feature and provide meaningful references
Add column
clinvar_review_status_autogvp
that will include description of how variants with conflicting interpretation were resolved (e.g.,"criteria_provided,_conflicting_interpretations, consensus call taken"
What input data are required for this feature or analysis?
ClinVar variant and submission summary files
How do you plan to organise the feature or analysis - will it be a multi-function call or add to existing functions?
This will require modifications to
select-clinVar-submission.R
,annotate_variants_*_input.R
, and04-filter_gene_annotations.R
.Who will complete the feature request (please add a GitHub handle here if relevant)?
@rjcorb