What feature is being added or bug is being addressed?
Closes #177. This PR modifies annotate_variants_*_input.R so that, when calls are made with intervar and PVS1 == 0 / intervar_adjusted == "No", the original call from InterVar: InterVar and Evidence column of intervar file is taken as final_call
What was your approach?
see above
What GitHub issue does your pull request address?
177
Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.
Which areas should receive a particularly close look?
@rebkau can you run this on the sample we've been looking at (BS_XM3ER1N6), and confirm that the discrepancies have been resolved?
Is there anything that you want to discuss further?
Purpose/implementation Section
What feature is being added or bug is being addressed?
Closes #177. This PR modifies
annotate_variants_*_input.Rso that, when calls are made with intervar andPVS1 == 0/intervar_adjusted == "No", the original call fromInterVar: InterVar and Evidencecolumn of intervar file is taken asfinal_callWhat was your approach?
see above
What GitHub issue does your pull request address?
177
Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.
Which areas should receive a particularly close look?
@rebkau can you run this on the sample we've been looking at (BS_XM3ER1N6), and confirm that the discrepancies have been resolved?
Is there anything that you want to discuss further?
No