Save final ClinVar and InterVar calls for all variants

[rjcorb]

Purpose/implementation Section

What feature is being added or bug is being addressed?

Closes #188. This PR updates AutoGVP to obtain and save final ClinVar and InterVar calls (when available) for all input variants.

What was your approach?

• modified 02-annotate_variants_*_input.R to obtain final InterVar calls for all variants, and created columns final_call_clinvar and final_call_intervar to be saved in addition to final_call.
• Updated output_colnames.tsv to include columns autogvp_call_clinvar and autogvp_call_intervar.

What GitHub issue does your pull request address?

188

Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.

Which areas should receive a particularly close look?

Is there anything that you want to discuss further?

Documentation Checklist

• [ ] The function has examples to showcase the usage
• [ ] Added a vignette

[jharenza]

This runs and new columns are there, but I think you need to merge main into this to get the updated gitignore.

[rjcorb]

@jharenza should be all set now