diskin-lab-chop / AutoGVP

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update 1NR variant classification to be compatible with new ClinVar nomenclature #242

Closed rjcorb closed 4 months ago

rjcorb commented 4 months ago

Purpose/implementation Section

Briefly descibe the feature and provide meaningful references

ClinVar VCFs as of Feb 2024 have replaced the Review Status value "criteria_provided,_conflicting_interpretations" with "criteria_provided,_conflicting_classifications". The classification of 1NR ClinVar variants by AutoGVP needs to be updated to search for either of these values to be compatible with both old and newer ClinVar VCFs.

What input data are required for this feature or analysis?

How do you plan to organise the feature or analysis - will it be a multi-function call or add to existing functions?

Who will complete the feature request (please add a GitHub handle here if relevant)?

@rjcorb