diskin-lab-chop / AutoGVP

17 stars 3 forks source link

Intervar_adjusted_call with Yes but no criteria that requires adjustment #47

Closed jungkim2 closed 1 year ago

jungkim2 commented 1 year ago

For some examples, where variants have PVS1 score, and based on autoPVS1, it still remains to have PVS1 score. Therefore, no Intervar adjustment should have been made. But on final output, it says "yes" for intervar_adjusted_call.

12-20879491-TA-T InterVar: Likely pathogenic PVS1=1 PS=[0, 0, 0, 0, 0] PM=[0, 1, 0, 0, 0, 0, 0] PP=[0, 0, 0, 0, 0, 0] BA1=0 BS=[0, 0, 0, 0, 0] BP=[0, 0, 0, 0, 0, 0, 0, 0]

jungkim2 commented 1 year ago

it was passed to intervar for possible adjustment .... not necessarily underwent adjustment