This PR addresses issue #51 by removing all lines of code related to gnomad AF, variant AF, and variant depth filtering. This is now performed in a separate bash script prior to running AutoGVP and is thus obsolete.
Please review code updates in 01-annotate_variants_CAVATICA_input.R and 01-annotate_variants_custom_input.R
This PR addresses issue #51 by removing all lines of code related to gnomad AF, variant AF, and variant depth filtering. This is now performed in a separate bash script prior to running AutoGVP and is thus obsolete.
Please review code updates in
01-annotate_variants_CAVATICA_input.Rand01-annotate_variants_custom_input.R