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diskin-lab-chop / AutoGVP

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removed variants from intervar run that got a call from submission files #72

Closed naqvia closed 1 year ago

naqvia commented 1 year ago

Related to https://github.com/diskin-lab-chop/AutoGVP/issues/50

naqvia commented 1 year ago

For this push, I suspect we are getting two calls, bc even after a call obtained from the submissions files, these variants are still going through the intervar adjustment steps, which they should NOT, and subsequently get another call from there. I filter these out now after they are found in the submission files. These variants are a small subset/rare ones that are labeled as "Need resolving" when going through the clinVar file.

naqvia commented 1 year ago

Current issue has been fixed. There are other issues that @jungkim2 will write an ticket for!

naqvia commented 1 year ago

latest commit is related to https://github.com/diskin-lab-chop/AutoGVP/issues/76