Closed rjcorb closed 1 year ago
The filter_vcf.sh script has been modified as follows:
filter_vcf.sh
AF >= 0.2
See above
Please run following command to test filtering script updates
bash filter_vcf.sh input/test-filter.vcfgnomad_3_1_1_AF_non_cancer<0.1 | gnomad_3_1_1_AF_non_cancer="."'`
bash filter_vcf.sh input/test-filter.vcf
The the last few lines of filtered vcf header, which should specify that filtering was performed based on default and gnomad criteria.
No
Purpose/implementation Section
What feature is being added or bug is being addressed?
The
filter_vcf.shscript has been modified as follows:AF >= 0.2What was your approach?
See above
What GitHub issue does your pull request address?
88
Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.
Please run following command to test filtering script updates
bash filter_vcf.sh input/test-filter.vcfgnomad_3_1_1_AF_non_cancer<0.1 | gnomad_3_1_1_AF_non_cancer="."'`Which areas should receive a particularly close look?
The the last few lines of filtered vcf header, which should specify that filtering was performed based on default and gnomad criteria.
Is there anything that you want to discuss further?
No
Documentation Checklist