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divelab / GOOD

GOOD: A Graph Out-of-Distribution Benchmark [NeurIPS 2022 Datasets and Benchmarks]
https://good.readthedocs.io/
GNU General Public License v3.0
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ERROR: Cannot install graph-ood and graph-ood==1.1.1 because these package versions have conflicting dependencies. #12

Closed Ee1s closed 1 year ago

Ee1s commented 1 year ago

Hi GOOD Team @CM-BF , Thanks for the great dataset. I had some problems like #9 with the installation on Mac. WeChatefaa5a21f9fafef5c370118e7506f258

I followed the solution you suggested in #9, but it didn't work. I also tried updating typed-argument-parser==1.7.2 and that didn't work either. Could you help me to solve this problem? Thanks.

This is my pip list:

Package Version

absl-py 1.4.0 alabaster 0.7.13 antlr4-python3-runtime 4.9.3 appnope 0.1.3 asttokens 2.2.1 attrs 22.2.0 Babel 2.12.1 backcall 0.2.0 beautifulsoup4 4.12.0 cachetools 5.3.0 captum 0.2.0 certifi 2022.12.7 charset-normalizer 3.1.0 cilog 1.2.3 cloudpickle 2.2.1 cvxopt 1.3.0 cycler 0.11.0 decorator 5.1.1 dive-into-graphs 0.1.2 docutils 0.17.1 et-xmlfile 1.1.0 executing 1.2.0 filelock 3.10.7 fonttools 4.39.3 gdown 4.7.1 google-auth 2.17.1 google-auth-oauthlib 0.4.6 grpcio 1.53.0 hydra-core 1.3.2 idna 3.4 imagesize 1.4.1 importlib-metadata 6.1.0 importlib-resources 5.12.0 iniconfig 2.0.0 ipython 8.12.0 jedi 0.18.2 Jinja2 3.1.2 joblib 1.2.0 kiwisolver 1.4.4 littleutils 0.2.2 llvmlite 0.39.1 Markdown 3.4.3 MarkupSafe 2.1.2 matplotlib 3.5.2 matplotlib-inline 0.1.6 mpmath 1.3.0 munch 2.5.0 mypy-extensions 1.0.0 networkx 2.8 numba 0.56.4 numpy 1.23.5 oauthlib 3.2.2 ogb 1.3.5 omegaconf 2.3.0 openpyxl 3.1.2 outdated 0.2.2 packaging 23.0 pandas 2.0.0 parso 0.8.3 pexpect 4.8.0 pickleshare 0.7.5 Pillow 9.5.0 pip 23.0.1 pluggy 1.0.0 prompt-toolkit 3.0.38 protobuf 3.20.1 psutil 5.9.4 ptyprocess 0.7.0 pure-eval 0.2.2 py 1.11.0 pyasn1 0.4.8 pyasn1-modules 0.2.8 Pygments 2.14.0 pynvml 11.4.0 pyparsing 3.0.9 PySocks 1.7.1 pytest 7.1.2 python-dateutil 2.8.2 pytz 2023.3 PyYAML 6.0 rdkit 2022.9.5 rdkit-pypi 2022.9.5 requests 2.28.2 requests-oauthlib 1.3.1 rsa 4.9 ruamel.yaml 0.17.21 ruamel.yaml.clib 0.2.7 scikit-learn 1.2.2 scipy 1.10.1 setuptools 59.5.0 shap 0.41.0 six 1.16.0 slicer 0.0.7 snowballstemmer 2.2.0 soupsieve 2.4 Sphinx 5.3.0 sphinx-rtd-theme 1.0.0 sphinxcontrib-applehelp 1.0.4 sphinxcontrib-devhelp 1.0.2 sphinxcontrib-htmlhelp 2.0.1 sphinxcontrib-jsmath 1.0.1 sphinxcontrib-qthelp 1.0.3 sphinxcontrib-serializinghtml 1.1.5 stack-data 0.6.2 sympy 1.11.1 tabulate 0.9.0 tensorboard 2.8.0 tensorboard-data-server 0.6.1 tensorboard-plugin-wit 1.8.1 threadpoolctl 3.1.0 tomli 2.0.1 torch 1.10.1 torch-geometric 2.0.4 torch-scatter 2.0.9 torch-sparse 0.6.13 torchaudio 0.10.1 torchvision 0.11.2 tqdm 4.64.0 traitlets 5.9.0 typed-argument-parser 1.5.4 typing_extensions 4.5.0 typing-inspect 0.8.0 tzdata 2023.3 urllib3 1.26.15 wcwidth 0.2.6 Werkzeug 2.2.3 wheel 0.38.4 zipp 3.15.0

CM-BF commented 1 year ago

Hi Luzhi,

The problem is caused by the wrong version of dive-into-graph. The latest dig version is 1.0.0. However, in your packages list, dive-into-graphs==0.1.2 causes the conflict versions of typed-argument-parser 1.5.4 and 1.7.2. Therefore, the solution is to install the dive-into-graphs==1.0.0.

Please let me know if any questions. :smile:

Ee1s commented 1 year ago

Hi Shurui, Thanks for your kind reply. I have tried to install dive-into-graphs 1.0.0, but encountered an error:

image

To address this issue, I attempted to install pyscf==1.7.6.post1 and got the following error: image

I am unsure if this issue can be resolved, and I am considering switching from Mac to Linux. Thank you for your assistance.

Luzhi Wang

CM-BF commented 1 year ago

I hope you've solved the problem through using Linux. Since there is no further update, I'll close this issue. Please feel free to reopen it if needed. :)