divonlan
commented
2 years ago Thanks for the catch! I updated the documentation, and the seg fault will go away in the next release.
On Thu, Mar 17, 2022 at 10:29 AM Jimmy Breen @.***> wrote:
Just doing some testing on the make-reference option https://genozip.readthedocs.io/genozip.html#cmdoption-make-reference
FASTA-specific options (ignored for other file types):
--make-reference Compresss a FASTA file to be used as a reference in --reference or --REFERENCE. Example: genozip --make-reference hs37d5.fa.gz
Example: cat *.fa | genozip --input fasta --make-reference --output myref.ref.genozip
That example gives a seg fault because no input stream is specified. I think you just missed the - after --make-reference
Example: cat *.fa | genozip --input fasta --make-reference - --output myref.ref.genozip
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Just doing some testing on the make-reference option
That example gives a seg fault because no input stream is specified. I think you just missed the
-after--make-reference