Open selasphoruskershaw opened 3 years ago
Hi,
You closed the issue, did you solve it ? Otherwise I'll transfer it to the right repo : https://github.com/diyabc/diyabcGUI/issues
Hi there,
I was able to upload my data, however, it has now been on the "loading and checking the data file may take some time" message for about 16 hours now, and I have not been able to set up my analysis any further. I'd appreciate any help I can get. Thanks.
On Mon, May 17, 2021 at 11:59 PM fradav @.***> wrote:
Hi,
You closed the issue, did you solve it ? Otherwise I'll transfer it to the right repo : https://github.com/diyabc/diyabcGUI/issues
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Hi, Increasing the "Maximum upload file size" should do the trick. I will check if there is some issue with it.
Regarding your second problem with the data checking, we are currently working on a major release that should robustify the whole data processing framework. It should be available in the next few days. Would that be possible for you to wait for it ?
Thanks in advance, I'll keep you updated here
Thank you! Yes, I can wait for the new release. Looking forward to it!
On Wed, May 19, 2021 at 7:14 AM gdurif @.***> wrote:
Hi, Increasing the "Maximum upload file size" should do the trick. I will check if there is some issue with it.
Regarding your second problem with the data checking, we are currently working on a major release that should robustify the whole data processing framework. It should be available in the next few days. Would that be possible for you to wait for it ?
Thanks in advance, I'll keep you updated here
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Hi, I am really sorry, the next release was delayed to the end of June. I hope this will be ok. All apologies for the trouble.
Hello,
Just wondering if you have a target date for when the fix for diyabc-Rf Wil be finished.
Thanks,
Brian Myers On Mon, Jun 14, 2021 at 6:38 AM gdurif @.***> wrote:
Hi, I am really sorry, the next release was delayed to the end of June. I hope this will be ok. All apologies for the trouble.
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Hi, Sorry again for the delay. The new release should be available next week. Best
Hi, I am again really sorry for the delay, but the new version of the GUI is at least available on branch refactor_app
, see PR #96
If you want to try it first hand, you can install the R package and run the app with:
devtools::install_github("diyabc/diyabcGUI", ref = "refactor_app", subdir = "R-pkg")
library(diyabcGUI)
dl_all_latest_bin()
diyabc()
It will be merged tomorrow in master
and a new version of the beta release will be published.
Hello,
Thanks for your email. I tried using the code you provided to install the updated version of DIYABC-RF, and received this message:
devtools::install_github("diyabc/diyabcGUI", ref = "refactor_app") Downloading GitHub repo @.***_app Error: Failed to install 'diyabcGUI' from GitHub: Does not appear to be an R package (no DESCRIPTION)
What should I do?
Thanks, Brian
On Mon, Aug 23, 2021 at 9:24 AM gdurif @.***> wrote:
Hi @ALL https://github.com/ALL, I am again really sorry for the delay, but the new version of the GUI is at least available on branch refactor_app, see PR #96 https://github.com/diyabc/diyabcGUI/pull/96
If you want to try it first hand, you can install the R package and run the app with:
devtools::install_github("diyabc/diyabcGUI", ref = "refactor_app") dl_all_latest_bin() diyabc()
It will be merged tomorrow in master and a new version of the beta release will be published.
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I am really sorry, I fixed the code snippet, it was missing some stuff.
Hello,
Unfortunately I'm still getting the same error. Should I just wait until the beta release is updated tomorrow?
Thanks for your help, Brian
On Mon, Aug 23, 2021 at 2:16 PM gdurif @.***> wrote:
I am really sorry, I fixed the code snippet, it was missing some stuff.
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Hi, I am encountering a network issue delaying the release build (always the final step...), hopefully it will be fixed in a few hours.
In the mean time, could tell more information about your system (OS, R version). I tested the command devtools::install_github("diyabc/diyabcGUI", ref = "refactor_app", subdir = "R-pkg")
and it worked for me, so I don't understand what could be the problem.
Thanks,
Hi,
I was able to get that above command to run, but I now get the following error message when trying to run the GUI when running the diyabcGUI::diyabc() command:
"Warning in get0(oNam, envir = ns) : restarting interrupted promise evaluation Warning in get0(oNam, envir = ns) : internal error -3 in R_decompress1 Error in get0(oNam, envir = ns) : lazy-load database '/Library/Frameworks/R.framework/Versions/4.0/Resources/library/cachem/R/cachem.rdb' is corrupt
"
Here is all of the code:
library(devtools) devtools::install_github("diyabc/diyabcGUI", ref = "refactor_app", subdir = "R-pkg") devtools::install_github( "diyabc/diyabcGUI", subdir = "R-pkg" ) diyabcGUI::dl_all_latest_bin() diyabc() library(diyabcGUI) diyabcGUI::diyabc()
I have MacOS Big Sur 11.2.3. RStudio 1.4.1106, R 4.0.5.
Thanks for your help, Brian
On Tue, Aug 24, 2021 at 6:13 AM gdurif @.***> wrote:
Hi, I am encountering a network issue delaying the release build (always the final step...), hopefully it will be fixed in a few hours.
In the mean time, could tell more information about your system (OS, R version). I tested the command devtools::install_github("diyabc/diyabcGUI", ref = "refactor_app", subdir = "R-pkg") and it worked for me, so I don't understand what could be the problem.
Thanks,
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The new code is now merged into the main branch, so devtools::install_github("diyabc/diyabcGUI", subdir = "R-pkg")
will now work.
Regarding your issue, I think you could try to reinstall the cachem
package with install.packages("cachem")
before trying to run library(diyabc)
and diyabc()
.
At the moment, I am not able to do some checks on a MacOS machine. In addition, I use R 4.1.0, maybe there is also a retro-compatibility issue. I will try to test an older version of R.
The new beta release is available (but only for Windows at the moment, on MacOS you will have to continue installing the R package).
Hi there,
After waiting for the update and increasing the maximum upload size, when I try to upload my data file (~650 Mb), it continuously loads, and will do so for several days, without ever being loaded. Thus, I can't get the software to run because I can't get my dataset uploaded. Can you please help?
I am using a Mac and am up to date with the software.
On Fri, Aug 27, 2021 at 2:11 AM gdurif @.***> wrote:
The new beta release is available (but only for Windows at the moment, on MacOS you will have to continue installing the R package).
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Hi, I was able to work through the issue above, but I'm having a similar issue as others: I keep having an issue in which I validate all of my parameters, but upon hitting "simulate", I receive the issue: Project is not ready. Check settings above. Do you know when a fix will be ready? Thanks!
Hi, there is a new release v1.1.1-beta. Could you tell me if it works for you?
Hello,
I am launching the GUI on a Mac using R Studio. When I try to import my .snp data file (generated by the vcf2DIYabc script), I get the following message: "Maximum upload size exceeded." When I navigate to preferences and change the "Maximum upload file size (in Mb)" to "1000" (my data file is about 625 Mb) I still get the same error when I try to import it. Is there something I'm missing here? Is there an alternative? I'm using whole-genome SNP data. Thanks for your help.