Problems while running: Issues with run (see log panel below).

[MCampos92]

Hi! I'm trying to run diyabcGUI but I'm having troubles with the simulation. I filled all the parameters and when I run it, it returns an error but it doesn't specify where is the problem. I would like to know what I'm doing wrong just to know how to fix it.

Bug file.txt

If you need I can put all the parameters and screenshots.

Thanks, Miguel

[MCampos92]

[gdurif]

Hi, sorry for the trouble.

Could you tell me which version of the GUI you are using ? (there was a new release v1.1.1-beta last friday)

And also could you attached the generated header file ?

Thanks

[MCampos92]

When I try to update the package it only updates abcranger. I attach images, I have tried to force the installation, currently the version I have installed is the one shown in the image. The header file does not appear to me when I download the data. When clicking on Save project it only downloads the files:

• diyabc_run_call.log
• diyabc_seed_init_call.log
• maf.txt
• Stacei.snp
• Stacei.snp.bin
• Stacei.snpbin.txt

But no header file.

[gdurif]

Could you try to reinstall the diyabcGUI package ? with the command

devtools::install_github(
    "diyabc/diyabcGUI",
    subdir = "R-pkg"
)

and also copy-paste the output of the command sessionInfo() ?

[MCampos92]

sessionInfo() R version 4.1.1 (2021-08-10) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19043)

Matrix products: default

locale: [1] LC_COLLATE=Spanish_Spain.1252 LC_CTYPE=Spanish_Spain.1252 LC_MONETARY=Spanish_Spain.1252 LC_NUMERIC=C
[5] LC_TIME=Spanish_Spain.1252

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] shiny_1.7.1

loaded via a namespace (and not attached): [1] sass_0.4.0 pkgload_1.2.3 tidyr_1.1.4 jsonlite_1.7.2 bslib_0.3.1 shinybusy_0.2.2
[7] assertthat_0.2.1 sp_1.4-6 shinyhelper_0.3.2 remotes_2.4.1 sessioninfo_1.2.1 shinyFeedback_0.4.0 [13] pillar_1.6.4 lattice_0.20-44 glue_1.5.0 digest_0.6.28 promises_1.2.0.1 colorspace_2.0-2
[19] htmltools_0.5.2 httpuv_1.6.3 pkgconfig_2.0.3 devtools_2.4.2 maxnet_0.1.4 raster_3.5-2
[25] purrr_0.3.4 xtable_1.8-4 scales_1.1.1 processx_3.5.2 fontawesome_0.2.2 terra_1.4-22
[31] later_1.3.0 tibble_3.1.6 generics_0.1.1 ggplot2_3.3.5 usethis_2.1.3 ellipsis_0.3.2
[37] cachem_1.0.6 withr_2.4.2 shinyjs_2.0.0 pbapply_1.5-0 cli_3.1.0 magrittr_2.0.1
[43] crayon_1.4.2 mime_0.12 memoise_2.0.1 ps_1.6.0 fs_1.5.0 fansi_0.5.0
[49] pkgbuild_1.2.0 shinydashboard_0.7.2 tools_4.1.1 dismo_1.3-5 prettyunits_1.1.1 lifecycle_1.0.1
[55] stringr_1.4.0 munsell_0.5.0 zip_2.2.0 callr_3.7.0 compiler_4.1.1 jquerylib_0.1.4
[61] rlang_0.4.12 grid_4.1.1 rstudioapi_0.13 htmlwidgets_1.5.4 diyabcGUI_1.1.1 shinyWidgets_0.6.2
[67] testthat_3.1.0 gtable_0.3.0 codetools_0.2-18 DBI_1.1.1 curl_4.3.2 markdown_1.1
[73] R6_2.5.1 lubridate_1.8.0 dplyr_1.0.7 fastmap_1.1.0 utf8_1.2.2 rprojroot_2.0.2
[79] desc_1.4.0 stringi_1.7.6 parallel_4.1.1 Rcpp_1.0.7 vctrs_0.3.8 tidyselect_1.1.1
[85] xfun_0.28

[gdurif]

I see that you are using Windows. Did you try to use the standalone GUI for Windows ? c.f. here

[MCampos92]

I just tryed and same error.

[vasotola]

I am also getting this error when I try to use more than one scenario. It runs fine with just one scenario, but when I add in more for model choice, I see the same "Issues with run (see log panel below)" warning but cannot figure out the issues from the log. Thanks!

[Jinyu8579]

I am also getting this error. Have you ever made it work?

[gdurif]

Hello, Sorry for the delay. We just published a new release (version 1.2.1) which should fix several issues. Could you tell me if it works better? Thanks in advance, Best regards

[Evolutionary-Cari]

I have been troubleshooting this same problem (Windows GUI v1.2.1) and, after checking the "reftable.txt" file it says: "A gene genealogy failed in scenario 1. Check consistency of this scenario over possible prior ranges of time event parameters."

I did not set any conditions on my parameters, but after setting t3>t2, t2>t1, etc. The simulations ran successfully!