search

djwooten / synergy

Python library for calculting synergy of drug combinations using several drug synergy frameworks
GNU General Public License v3.0
30 stars 6 forks source link

What should we do with replicates? #8

Closed genevievebo closed 3 years ago

genevievebo commented 3 years ago

What should we do if we have replicates? The parametric models should handle well the replicates. However, for the non parametric models (such as Bliss), replicates are not handled directly. Do you recommend that we aggregate (mean, median) the replicates for the non parametric models but not for the parametric ones? Thanks!

djwooten commented 3 years ago

Thanks for considering this case. I agree with your proposed solution, and merged #7. I also think this solution should be used for plot_surface_plotly(), which would have the same problem. I'll add that and push, along with a new version number for pip.