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dkahle / TITAN2

Threshold Indicator Taxa Analysis
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100% occurrence detected 1 times #9

Open miakeady opened 3 years ago

miakeady commented 3 years ago

Hello - I am trying to use the TITAN function and am following the vignette. I continue to get the following error. I am using 16s rRNA data and have ASVs as my taxa matrix. I have transformed to relative abundance and tried to remove taxa that are not present in 5 or more samples. I have tried filtering a few ways and still keep getting this same error.

100% occurrence detected 1 times (100.0% of taxa), use of TITAN less than ideal for this data type. taxa frequency screen complete. Partitioning along gradient... Error in env.part(env, taxa, minSplt = minSplt, messaging = messaging) : Number of sites not equal between env vector and taxa matrix

I am not sure why I am getting that my number of sites is not equal between the env vector and taxa matrix. Both of my data frames have 69 rows made up of the "sources". The taxa matrix has bacterial ASVs as columns.

Can you give more details on both parts of this error (100% occurrence and number of sites).

Thank you, Mia

dkahle commented 3 years ago

Hi @mkeady2! Thanks again for logging the issue, sorry we didn't respond here. Did this get resolved over email?

miakeady commented 3 years ago

Hi David,

Yes, it was resolved over email! Thanks!

Mia

From: David Kahle notifications@github.com Sent: Friday, December 4, 2020 10:07 AM To: dkahle/TITAN2 TITAN2@noreply.github.com Cc: mkeady2 mkeady2@masonlive.gmu.edu; Mention mention@noreply.github.com Subject: Re: [dkahle/TITAN2] 100% occurrence detected 1 times (#9)

Hi @mkeady2https://github.com/mkeady2! Thanks again for logging the issue, sorry we didn't respond here. Did this get resolved over email?

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