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dkaschek / dMod

Dynamic modeling and parameter estimation in R
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interfacing new lie-symmetry paper software #55

Open dlill opened 4 years ago

dlill commented 4 years ago

Would be interesting to interface the software that Clemens sent around today: https://www.mdpi.com/2073-8994/12/3/469 their code is here https://github.com/GemmaMasFes6/Lie-Symmetries

dkaschek commented 4 years ago

Did you check if it extends the possibilities of Bennies current python implementation?

dlill commented 4 years ago

No, but Jens said so. Might be something for Severin if he is interested. He's probably the one in the Timmer lab with the most knowledge about Lie groups ...

marcusrosenblatt commented 4 years ago

That would be very cool indeed. Best would be to directly link to the new PEtab/SBML-standard and suggest the transformations appropriately. I am planning to do this for the steady state tool as well. Is Bennis tool also on github or is there just the final version as we have it in dMod. I will send a link around to the group again. Since the code is in Matlab, parts of the group might tend to use the functions matlab internally... :-)

marcusrosenblatt commented 4 years ago

Talking with Severin on monday. Wanna join?