2.4.4 "release" is actually source

dkoboldt / varscan

Variant calling and somatic mutation/CNV detection for next-generation sequencing data

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2.4.4 "release" is actually source #52

Open flowers9 opened 4 years ago

flowers9 commented 4 years ago

If you check it against the the 2.4.4 source, the only difference is the internal file name.

Japrin commented 2 years ago

The directly downloaded 2.4.4 jar file VarScan.v2.4.4.jar contains source code (.java files) and class files (.class files). But it does not work. I have to re-create a jar file:

extract files in VarScan.v2.4.4.jar to VarScan.v2.4.4.build, then
use this command to create a new jar file. jar -v --create --file my.VarScan.v2.4.4.jar --manifest VarScan.v2.4.4.build/META-INF/MANIFEST.MF -C VarScan.v2.4.4.build/ .