dkoboldt / varscan

Variant calling and somatic mutation/CNV detection for next-generation sequencing data
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error download jar, corrupt or incomplete #60

Closed cmccabe0728 closed 3 years ago

cmccabe0728 commented 3 years ago

I am downloading the jar file and trying to run it and getting the below. I also tried 2.4.4 as well with the same result. I tried on centos 7 and 8. Thank you :).

wget https://github.com/dkoboldt/varscan/blob/master/VarScan.v2.4.3.jar.... download is 86932 in size

java -jar VarScan.v2.4.3.jar
Error: Invalid or corrupt jarfile VarScan.v2.4.3.jar

java cp VarScan.v2.4.3.jar
Error: Could not find or load main class cp

A previous download from last year of that same jar is 115272 in size.

cmccabe0728 commented 3 years ago

wget https://github.com/dkoboldt/varscan/raw/master/VarScan.v2.4.3.jar works.