MetaPalette fails on Bacteria database

dkoslicki / MetaPalette

Metagenomic profiling and phylogenetic distances via common kmers

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MetaPalette fails on Bacteria database #14

Open leoqiang opened 5 years ago

leoqiang commented 5 years ago

Hello,

When I run MetaPalette on a even very small dummy dataset with precompiled Bacteria db, it ends with a "Segmentation fault (core dumped)". I tried both Docker version and a local compilation, resulting the same issue. And I have no problem at all running either version with other databases. I have also tried to test it with test database built based on README, it also works.

Would it be possible to check whether there is any issue with the Bacteria db? Many thanks.

Best, Qiang

leoqiang commented 5 years ago

FYI:

I downloaded Bacteria db two times and had no issue to extract files.
The machine has 48 core and 366G memory. So resource wise should have no issue.