-Q parameter not escaped when passed on to Jellyfish

dkoslicki / MetaPalette

Metagenomic profiling and phylogenetic distances via common kmers

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Open AlexanderDilthey opened 7 years ago

AlexanderDilthey commented 7 years ago

Calling classify.py e.g. with

python Classify.py ... -Q * ...

breaks the code.

Possible solution:

re.escape(str(quality))

in classify.py, line 95ff.