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dkoslicki
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NCATS
MIT License
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cleanup git repo
#84
saramsey
closed
6 years ago
1
Extraneous top level folders
#83
dkoslicki
closed
6 years ago
2
TypeError in QuerySciGraph
#82
saramsey
closed
6 years ago
0
AttributeError in BioNetExpander
#81
saramsey
closed
6 years ago
0
Q05925 not in the KG
#80
saramsey
closed
6 years ago
0
fix some of the unmapped MESH terms
#79
saramsey
closed
6 years ago
0
some Q2 conditions still not mapping to DOIDs or HPOIDs
#78
saramsey
closed
6 years ago
0
get set up to make a screen-sharing movie using OBS
#77
saramsey
closed
6 years ago
1
update README files and other GitHub documentation, to reflect current code reality
#76
saramsey
closed
6 years ago
2
mapping of Q2 "conditions" to node IDs in our KG
#75
saramsey
closed
6 years ago
1
deploy Flask/OpenAPI UI from GitHub to lysine (after testing on ncats.saramsey.org)
#74
saramsey
closed
6 years ago
11
deploy Flask/OpenAPI UI from GitHub to ncats.saramsey.org for testing
#73
saramsey
closed
6 years ago
1
push PC2 protein-protein interactions to KG on lysine
#72
saramsey
closed
6 years ago
0
push PC2 protein-protein interactions to KG on ncats.saramsey.org
#71
saramsey
closed
6 years ago
0
AssertionError in Orangeboard due to my solution for #64
#70
saramsey
closed
6 years ago
0
AttributeError in Orangeboard
#69
saramsey
closed
6 years ago
0
try to map Q2 MeSH terms to Human Phenotype Ontology (for the ones that don't map to DOID)
#68
saramsey
closed
6 years ago
0
get Q2 diseases into the master KG
#67
saramsey
closed
6 years ago
0
ValueError in Orangeboard
#66
saramsey
closed
6 years ago
1
Add code to map variant<->disease and variant<->gene, for Q1
#65
saramsey
closed
6 years ago
2
Add code to pull in interactions from PC2 and put them in the master KG
#64
saramsey
closed
6 years ago
2
add code to convert MeSH disease ID to disease ontology ID
#63
saramsey
closed
6 years ago
0
need Orangeboard.count_rels_by_reltype method
#62
saramsey
closed
6 years ago
1
NCBI eUtils timeout
#61
dkoslicki
closed
6 years ago
0
QueryNCBIeUtils.get_medgen_id_for_omim_id returns a set of medgen ids
#60
dkoslicki
closed
6 years ago
3
incorporate OMIM-to-MeSH in Q1Solution.py
#59
dkoslicki
closed
6 years ago
2
Orangeboard to support CSV output format
#58
saramsey
closed
6 years ago
0
Assertion in QueryBioLink
#57
saramsey
closed
6 years ago
0
ncats.saramsey.org server has missing description info for omim_disease
#56
zheng-liu
closed
6 years ago
5
add description for new OMIM nodes in TestSet
#55
saramsey
closed
6 years ago
0
add drugs to master KG
#54
saramsey
closed
6 years ago
1
print timing information in debug mode in Orangeboard
#53
saramsey
closed
6 years ago
0
need a solution for programmatically query to get MeSH terms for MIM numbers
#52
saramsey
closed
6 years ago
0
undefined object in QueryMyGene
#51
saramsey
closed
7 years ago
0
we are getting uniprot IDs with isoform hyphens in them
#50
saramsey
closed
6 years ago
0
need programmatic way to query from OMIM number to MeSH term
#49
saramsey
closed
6 years ago
0
QueryOMIM KeyError
#48
saramsey
closed
7 years ago
0
we added a loop relationship, somewhere in BioNextExpander (look in latest commit)
#47
saramsey
closed
7 years ago
0
issue in QueryReactome
#46
saramsey
closed
7 years ago
0
404 Exception in QueryMyGene
#45
saramsey
closed
7 years ago
1
seeing some mouse microRNAs showing up
#44
saramsey
closed
7 years ago
0
404 error in QuerySciGraph and unexpected phenotype name type "AQTLTrait"
#43
saramsey
closed
7 years ago
1
NLP code
#42
dkoslicki
closed
7 years ago
1
assertion error in QueryGeneProf
#41
saramsey
closed
7 years ago
0
Add protein->GeneOntology mapping
#40
saramsey
closed
6 years ago
1
timeout in QueryDisGeNet.py
#39
saramsey
closed
7 years ago
0
KeyError in QueryMyGene
#38
saramsey
closed
7 years ago
0
try commenting out node.in_rels and node.out_rels
#37
saramsey
closed
7 years ago
1
Investigate if the disease->phenotype mapping should be filtered
#36
saramsey
closed
6 years ago
1
MODERATEPRIORITY: Why does Orangeboard use so much system RAM?
#35
saramsey
closed
7 years ago
3
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