Similar to FASTA and MultiFASTA, there are two acceptable profiling formats:
Those that contain a single profile (like this example)
Those that contain multiple profiles (like this example)
Currently, the user has the option to select, from a multi-profile, a single sample to plot (indicated via the header information @SampleID:sample_0.
Need to:
[x] make the default spit out one plot for every sample in a multi-profile (this will have the added benefit of automatically properly handling a single-profile)
[x] add the ability to average over all the @SampleID's and plot a single tree (these multi-profiles are meant to represent multiple biological replicates of a single sample, so averaging is acceptable). Averaging should be done at each taxonomic rank (i.e. level of the tree) individually. Stub is shown here of where that can be accomplished.
dkoslicki
commented
4 years ago
Similar to FASTA and MultiFASTA, there are two acceptable profiling formats:
Currently, the user has the option to select, from a multi-profile, a single sample to plot (indicated via the header information
@SampleID:sample_0.Need to:
@SampleID's and plot a single tree (these multi-profiles are meant to represent multiple biological replicates of a single sample, so averaging is acceptable). Averaging should be done at each taxonomic rank (i.e. level of the tree) individually. Stub is shown here of where that can be accomplished.