dkratzert / FinalCif

A CIF file finalizer for small molecule crystallography with as much automation as possible.
https://dkratzert.de/finalcif.html
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Better Support for Squeezed structures #19

Open dkratzert opened 2 years ago

dkratzert commented 2 years ago
oxidants-happen commented 2 years ago

Hi Daniel, thanks for this resource! A couple other things would be helpful: -Include something about Squeeze in report templates -Include references for Platon and Squeeze in report templates

dkratzert commented 2 years ago

Hi Tyler, do you have some example structures? I close to never used squeeze myself.

oxidants-happen commented 2 years ago

Hi Daniel,

Yes, I have 7 structures where I had to use squeeze on all of them. They’re all in the same unit cell, but they have different metals in the binding sites. They’re also 100% disordered with the molecule upside down in the C3 symmetric asymmetric unit. I had to squeeze out a disordered triflate that ended up looking a lot like a PF6.

I’m not sure if OLEX does it in their CIF output, but they do have some sort of validation in the refinement process.

I’ll send a followup email with the pretty much final cif and the accompanying report and Platon list file of one of them to your main email.

-Tyler

Tyler Kerr PhD Candidate Yang Lab Department of Chemistry University of California, Irvine

On Oct 5, 2022, at 10:29 AM, Daniel Kratzert @.***> wrote:

Hi Tyler, do you have some example structures? I close to never used squeeze myself.

— Reply to this email directly, view it on GitHub https://urldefense.com/v3/__https://github.com/dkratzert/FinalCif/issues/19*issuecomment-1268724992__;Iw!!CzAuKJ42GuquVTTmVmPViYEvSg!J2r_FGsm2vBQu0gPzH1qA52_gdjTzUFISlEJd04XVB3e8kXdoXTyrLSe1jkRdUpIHHWTfrPMsGpSSDeh1JaLfg$, or unsubscribe https://urldefense.com/v3/__https://github.com/notifications/unsubscribe-auth/A3OFWUF63FDC2ID32JJZZ4LWBW3F3ANCNFSM5MRWXOVA__;!!CzAuKJ42GuquVTTmVmPViYEvSg!J2r_FGsm2vBQu0gPzH1qA52_gdjTzUFISlEJd04XVB3e8kXdoXTyrLSe1jkRdUpIHHWTfrPMsGpSSDcZdrZVTg$. You are receiving this because you commented.

dkratzert commented 1 year ago

Note to myself: See mail at 05.10.2022

dkratzert commented 3 months ago