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dmcable / spacexr

Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
GNU General Public License v3.0
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RCTD results #205

Open balthasar0810 opened 5 months ago

balthasar0810 commented 5 months ago

Hello!

One question about the interpretation of the results from RCTD:

image

I am not sure how to interpret this.

  1. Which cell type assignement is confident? Only spot_class "singlet"?
  2. Why is first_class FALSE for every single cell in my object?
  3. Why does a spot_class "reject" gets a first_type assignment?
  4. Where can I find a confidence measure for celltype assignment?

Thanks! Chris