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dmis-lab
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BERN2
BERN2: an advanced neural biomedical namedentity recognition and normalization tool
http://bern2.korea.ac.kr
BSD 2-Clause "Simplified" License
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Bern2 is failing in API instance
#71
bikashpanda11
closed
4 days ago
10
local instance of BERN2 fails to run
#70
rafsanahmed
opened
1 month ago
0
RESTful API method not working with Python
#69
mtranchero
opened
1 month ago
1
Plain text request is not working anymore with RESTful API nor website
#68
bcourbon
opened
1 month ago
0
Local service not starting correctly
#67
markediger
opened
2 months ago
0
Getting Timeout Errors while using Restful API method
#66
bikashpanda11
closed
1 week ago
2
Max retries exceeded with url: /plain
#65
luisenriqueramos1977
opened
4 months ago
0
Restful API method throwing 500 INTERNAL SERVER ERROR
#64
bikashpanda11
closed
4 months ago
5
fix no_cuda for BENR2 app file
#63
minstar
closed
5 months ago
0
fix no_cuda for NER model
#62
minstar
closed
5 months ago
0
Found no NVIDIA driver for CPU (run_bern2_cpu.sh)
#61
anopperl
closed
4 months ago
3
localhost error
#60
Morph0124
opened
5 months ago
2
Connection refused error
#59
anopperl
closed
5 months ago
4
NVIDIA Incompatibility
#58
jessicapatricoski
opened
7 months ago
1
Normalization giving the wrong species
#57
duncster94
opened
7 months ago
0
Train the model
#56
Kik099
opened
7 months ago
5
service down
#55
qiuhaolu
opened
9 months ago
2
nohup_multi_ner.out: list index out of range
#54
mjeensung
closed
10 months ago
2
bug in PMID REST-API: long publication titles get truncated after line break
#53
koernel2
closed
10 months ago
1
I don't get "mutation" type on the local version
#52
majdabd
opened
1 year ago
15
Got error when running run_eval.py
#51
shorlong
closed
1 year ago
1
500 Error when calling API
#50
elorenzen-rancho
closed
1 year ago
0
You SSL certificate for http://bern2.korea.ac.kr has expired
#49
rlaurie
closed
1 year ago
1
Longer than 512 tokens
#48
jinniulema
closed
1 year ago
2
Annotation of pubmed23 baseline
#47
PubMedKG
closed
1 year ago
1
Use only NER
#46
Crispae
closed
1 year ago
1
Use remote proxy
#45
zach-navina
closed
1 year ago
0
Google Drive Link Not Found
#44
marjoleinpnnl
closed
1 year ago
3
BERN2 RestfulAPI can't query plain text
#43
khoakoxoan
closed
1 year ago
2
Unable to get response
#42
Wickkey
opened
1 year ago
9
Support batch
#41
zach-navina
closed
1 year ago
0
Errors while extracting resource-file
#40
Bancherd-DeLong
closed
1 year ago
5
Unable to run it on Ubuntu 22. Anaconda already runs on port 8888. Response 403.
#39
zeusstuxnet
closed
1 year ago
1
BERN2 API endpoint not working
#38
Travis-Barton
closed
1 year ago
2
I'm running BERN2 but server can't be reached
#37
Ufifus
closed
1 year ago
3
I am running into same issue as @yuetieqi-meow
#36
kunlu-ou
closed
1 year ago
7
Resource file network error
#35
combax
closed
1 year ago
2
Syntax Error in server.py Causes BERN2 Local Installation to Not Work
#34
compbiolover
closed
2 years ago
5
Run BERN2 locally on Apple Silicon
#33
ghostintheshellarise
closed
2 years ago
2
linux cpu version upload
#32
minstar
closed
2 years ago
0
How disable some inner taggers
#31
mpperez3
closed
2 years ago
1
Unable to install bern2 dependencies on Mac OS
#30
naveenjack
closed
1 year ago
3
Problems encountered trying to run BERN2 in windows
#29
SatanuG
closed
2 years ago
4
need gpu and FileNotFoundError
#28
zhangweizhenGitHub
closed
2 years ago
2
Support NRE of new category of terms?
#27
hh1985
closed
1 year ago
10
Confusion about the differences between BERN & BERN2.
#26
sschet
closed
2 years ago
1
ERROR: 500 INTERNAL SERVER ERROR on web page when i try submit demo text
#25
Researcher-123
closed
2 years ago
3
FileNotFoundError: [Errno 2]
#24
yuetieqi-meow
closed
2 years ago
6
Security Issue block abstract result
#23
JacopoBandoni
closed
2 years ago
3
bash run_bern2.sh
#22
venkateshkolli
closed
2 years ago
1
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