Apart from "biosyn-ncbi-disease", are there any other pre-trained models available? or one trained on all?

dmis-lab / BioSyn

ACL'2020: Biomedical Entity Representations with Synonym Marginalization

https://arxiv.org/abs/2005.00239

MIT License

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Apart from "biosyn-ncbi-disease", are there any other pre-trained models available? or one trained on all? #2

Closed QaisarRajput closed 4 years ago

QaisarRajput commented 4 years ago

I have been trying to compare BioSyn with BERN. But currently for BioSyn only biosyn-ncbi-disease pre-trained model is available. Although i can train on the other datasets bc5cdr-disease, bc5cdr-chemical (as you have mentioned and shared the scripts). But are there any pre-trained version which can be shared which are reported in the paper

mjeensung commented 4 years ago

Thank you for your patience. I just uploaded the pre-trained version you asked.

biosyn-bc5cdr-disease https://drive.google.com/drive/folders/18dD0s9DY5w7zb04D-jVfxY5ZqnEMi7T7?usp=sharing

biosyn-bc5cdr-chemical https://drive.google.com/drive/folders/1wietDDEFDaDh3n7JdzfAqLSC6h_mEO_O?usp=sharing