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dmis-lab / biobert-pytorch

PyTorch Implementation of BioBERT
http://doi.org/10.1093/bioinformatics/btz682
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Running NER #31

Closed SatanuG closed 2 years ago

SatanuG commented 2 years ago

How can I run NER of BioBERT on raw text? How do I have to preprocess the text? Is there any particular format?

wonjininfo commented 2 years ago

Hi, Thank you for your interest in our work. You may be interested in BERN1 or BERN2 (with better performance and throughput), which are applications of biobert / biomedical LMs (different papers) from our research group.
Best, Wonjin

SatanuG commented 2 years ago

I am sorry, but the link is not accessible. Can you please provide an alternate link or GitHub repo?

Best, Satanu.

mjeensung commented 2 years ago

Hi @SatanuG

BERN2 is now accessible. Could you try it again?

SatanuG commented 2 years ago

Thanks a lot for your help! I can access it now. Best, Satanu.