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dmis-lab / biobert

Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining
http://doi.org/10.1093/bioinformatics/btz682
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Help required with NER #136

Open Orneyfish opened 4 years ago

Orneyfish commented 4 years ago

I want to use this Model for NER and for my dataset. Being too much new to this I can't find my way to get my data tagged with it. What I wanna do is to give a input and get all the medical terms tagged out. If anyone can help me I will be thankful.

AndreasSaka commented 4 years ago

Hey @Orneyfish. Please refine your questions because it is difficult to understand. What is the format of your data? What kind of tags do you expect?

Orneyfish commented 4 years ago

My tags are Diseases, drugs mostly like that. I want to give a input of some sentences and get it tagged by the model. Do I need to have those sentences embedded? If so what's the next step. Can you guide me? Thanks and Regards, Anurag

On Tue, Sep 1, 2020 at 2:05 PM AndreasSaka notifications@github.com wrote:

Hey @Orneyfish https://github.com/Orneyfish. Please refine your questions because it is difficult to understand. What is the format of your data? What kind of tags do you expect?

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/dmis-lab/biobert/issues/136#issuecomment-684575726, or unsubscribe https://github.com/notifications/unsubscribe-auth/AM5QXABQGAQRFL3542KCJS3SDSW3LANCNFSM4QQFNNQQ .

srishti-git1110 commented 2 years ago

Hi @Orneyfish were you able to figure out how to go about doing it? I have some pubmed text files where I want the model to tag the diseases. Could you please help me with it?