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dmis-lab / biobert

Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining
http://doi.org/10.1093/bioinformatics/btz682
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Biobert text classification #16

Closed dongfang91 closed 5 years ago

dongfang91 commented 5 years ago

Hello,

Thanks for providing these useful resources.

I saw the code of run_classifier.py is the same as the original Bert repository, I guessed running text classification using BioBERT is the same as using original Bert. Have you tried some bio-medical text classification task? Just curious about how much gain we can get from BioBERT.

jhyuklee commented 5 years ago

Yes, biomedical relation extraction tasks in our paper are examples of biomedical text classification. You can use BioBERT for other biomedical text classification tasks, also.

oakkas commented 5 years ago

Hi @dongfang91,

Have you figured out how to do classification? I am trying to train a classifier for medical records as a binary classifier. Any suggestions? Thanks

nirvana0311 commented 4 years ago

Hi @dongfang91,

Have you figured out how to do classification? I am trying to train a classifier for medical records as a binary classifier. Any suggestions? Thanks

Hi @oakkas did you find any success in your classification task. Even am trying a binary classification task on medical records.

chocolocked commented 4 years ago

Any suggestions on using biobert for sequence classification?

coco07 commented 2 years ago

@dongfang91 @oakkas @nirvana0311 Hi people, have anyone of you found how to use BioBERT for text classification?