dmlc / xgboost

Scalable, Portable and Distributed Gradient Boosting (GBDT, GBRT or GBM) Library, for Python, R, Java, Scala, C++ and more. Runs on single machine, Hadoop, Spark, Dask, Flink and DataFlow
https://xgboost.readthedocs.io/en/stable/
Apache License 2.0
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Dead kernel when fitting XGBoost model #9798

Closed avaserin closed 11 months ago

avaserin commented 11 months ago

I have been running XGBoost in Jupyter Notebooks using Anaconda successfully for months. However, I recently updated conda to 23.7.4 and XGBoost to 1.7.3, and, now when I fit an XGBoost model, a popup comes up that says "Kernel Restarting: The kernel appears to have died. It will restart automatically." I am running a very small dataframe (around 100 features and 80 rows), so I think it is an issue with my version updates. I am running all of the following versions for other packages for reference:

XGBoost version: 1.7.3 NumPy version: 1.24.3 SciPy version: 1.11.3 Pandas version: 2.1.1 Python version: 3.9.12 (main, Apr 5 2022, 01:53:17) [Clang 12.0.0 ]

Does anyone know how I can fix this issue?

trivialfis commented 11 months ago

Could you please:

avaserin commented 11 months ago

When I ran

$ conda install xgboost=1.7.6

in my terminal I got:

Collecting package metadata (current_repodata.json): done Solving environment: unsuccessful initial attempt using frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): done Solving environment: unsuccessful initial attempt using frozen solve. Retrying with flexible solve.

PackagesNotFoundError: The following packages are not available from current channels:

Current channels:

To search for alternate channels that may provide the conda package you're looking for, navigate to

https://anaconda.org

and use the search bar at the top of the page.

trivialfis commented 11 months ago

Consider using conda-forge channel, https://anaconda.org/conda-forge/xgboost

MCRE-BE commented 11 months ago

Same issue with 1.7.6 2.0.2 is available nowhere on conda-forge.

=== update === installed 2.0.0 -> Kernel crash installed 2.0.2 -> Kernel crash Installed 1.7.6 => Working now

# Name Version Build Channel _py-xgboost-mutex 2.0 cpu_0 conda-forge adagio 0.2.4 pyhd8ed1ab_0 conda-forge alabaster 0.7.13 pyhd8ed1ab_0 conda-forge alembic 1.12.1 pyhd8ed1ab_0 conda-forge antlr-python-runtime 4.11.1 pyhd8ed1ab_0 conda-forge antlr4-python3-runtime 4.11.1 pyh1a96a4e_0 conda-forge anyio 4.0.0 pyhd8ed1ab_0 conda-forge appdirs 1.4.4 pyh9f0ad1d_0 conda-forge archspec 0.2.2 pyhd8ed1ab_0 conda-forge argon2-cffi 23.1.0 pyhd8ed1ab_0 conda-forge argon2-cffi-bindings 21.2.0 py311ha68e1ae_4 conda-forge arrow 1.3.0 pyhd8ed1ab_0 conda-forge astor 0.8.1 pyh9f0ad1d_0 conda-forge astroid 3.0.1 py311h1ea47a8_0 conda-forge asttokens 2.4.1 pyhd8ed1ab_0 conda-forge async-lru 2.0.4 pyhd8ed1ab_0 conda-forge attrs 23.1.0 pyh71513ae_1 conda-forge aws-c-auth 0.7.7 h84b5a32_1 conda-forge aws-c-cal 0.6.9 hde771f8_1 conda-forge aws-c-common 0.9.8 hcfcfb64_0 conda-forge aws-c-compression 0.2.17 hde771f8_6 conda-forge aws-c-event-stream 0.3.2 hac16e19_7 conda-forge aws-c-http 0.7.14 h9b49971_2 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trivialfis commented 11 months ago

Could you please share your notebook? Maybe in private?

MCRE-BE commented 11 months ago

What are you looking for? For me it crashes as part of a package. So the notebook calls classes that are hidden. Basically the notebook just calls :

loop = Loop(**params)
loop.run_forecast()
trivialfis commented 11 months ago

I don't know why it crashes, unless I can reproduce and debug the code myself I don't think I can find out the cause.

trivialfis commented 11 months ago

Basically,I need a https://en.m.wikipedia.org/wiki/Minimal_reproducible_example

MCRE-BE commented 11 months ago

Ok. Strangely, I don't think the problem is related to the code or the data. It's probably rather an install issue or an interaction with another package.

It seems to be solved now by deleting and reinstalling the environment from scratch.

trivialfis commented 11 months ago

Great! Feel free to reopen if there's any issue found in XGBoost.