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dmlond / arangs2015

Repository for Automated and Reproducible Analysis of NextGen Sequence 2015
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Question on Docker part of the course #20

Open rioualen opened 8 years ago

rioualen commented 8 years ago

Hello, it's been a while!

I was at last year's edition of ARANGS, and I am now starting to use Docker in my job, after using virtual machines for a while. I'd done a makefile to install all the tools that my pipeline requires. Now I'm switching to Docker, I'd like to replace the makefile by my own images.

So I looked at the files from last year, and now I'm wondering if there's a reason for you to use both a bash file and a docker file to install the tools, instead of just using a docker file ? (like this for example : https://github.com/kathrinklee/docker)

Good luck for the next edition of ARANGS, which I believe is coming soon! I liked it a lot last year!

Bye

Claire

dmlond commented 8 years ago

We used the bash scripts as a convenience for complicated multi-image processes. This has been made much easier with docker-compose (https://docs.docker.com/compose/) used in combination with your Dockerfiles.

Darin London

"I am beating out the rhythm for the whole #!"

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From: rioualen notifications@github.com<mailto:notifications@github.com> Reply-To: dmlond/arangs2015 reply@reply.github.com<mailto:reply@reply.github.com> Date: Wednesday, April 27, 2016 at 9:09 AM To: dmlond/arangs2015 arangs2015@noreply.github.com<mailto:arangs2015@noreply.github.com> Subject: [dmlond/arangs2015] Question on Docker part of the course (#20)

Hello, it's been a while!

I was at last year's edition of ARANGS, and I am now starting to use Docker in my job, after using virtual machines for a while. I'd done a makefile to install all the tools that my pipeline requires. Now I'm switching to Docker, I'd like to replace the makefile by my own images.

So I looked at the files from last year, and now I'm wondering if there's a reason for you to use both a bash file and a docker file to install the tools, instead of just using a docker file ? (like this for example : https://github.com/kathrinklee/docker)

Good luck for the next edition of ARANGS, which I believe is coming soon! I liked it a lot last year!

Bye

Claire

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