import neo in app.py - Githubissues

dmnfarrell / epitopepredict

Python package and command line tool for epitope prediction

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import neo in app.py #6

Closed wt12318 closed 3 years ago

wt12318 commented 3 years ago

When test this tool, it seems that the neo is not been imported:

epitopepredict -n -t

wrote config file default.conf
Traceback (most recent call last):
  File "/public/slst/home/wutao2/miniconda3/bin/epitopepredict", line 8, in <module>
    sys.exit(main())
  File "/public/slst/home/wutao2/miniconda3/lib/python3.8/site-packages/epitopepredict/app.py", line 497, in main
    neo.test_run()
NameError: name 'neo' is not defined

dmnfarrell commented 3 years ago

I had disabled the neo functionality as there were problems benchmarking it. It is not included in the paper.