This pull request makes the following changes / additions:
Updates the core dms-vep-pipeline-3 to the latest 3.8.0 version
Adds a separate analysis workflow in the non-pipeline_analyses/ directory. This workflow runs using a separate conda environment and snakemake pipeline that downloads and processes all available Rabies sequences on NCBI.
Add a custom_rules.smk as described in the dms-vep-pipeline-3documentation that runs a notebook comparing functional effects to natural variation. The output is added to the main html doc under "Additional analyses and data files" heading.
This pull request makes the following changes / additions:
dms-vep-pipeline-3to the latest3.8.0versionnon-pipeline_analyses/directory. This workflow runs using a separate conda environment and snakemake pipeline that downloads and processes all available Rabies sequences on NCBI.custom_rules.smkas described in thedms-vep-pipeline-3documentation that runs a notebook comparing functional effects to natural variation. The output is added to the main html doc under "Additional analyses and data files" heading.