Closed Bernadetadad closed 1 year ago
The source of this issue is that plotnine
does not work with the latest version of matplotlib
: see https://github.com/has2k1/plotnine/issues/621
@Bernadetadad, for now I just pinned the version of matplotlib
to be 3.5 until the plotnine
issue above is fixed. This is in the latest dms-vep-pipeline
: https://github.com/dms-vep/dms-vep-pipeline/pull/78
If you use that latest version, it should work now.
@jbloom for some reason when I run the pipeline on slurm it cannot load
matplotlib._contour
module require fordms_variants
. Pipeline fails in the first cell ofbuild_codon_variants.ipynb
notebook. The error log is below pipeline is onantibody_sera_selections_221022
branch. If I just run the notebook interactively importing all modules does not seem to be an issue. I'm running all of this indms-vep-pipeline
conda environment.