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dms-vep / dms-vep-pipeline-3

Pipeline for analyzing deep mutational scanning (DMS) of viral entry proteins (VEPs)
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Update `multidms` to allow pandas update. #145

Closed jgallowa07 closed 5 months ago

jgallowa07 commented 5 months ago

Re #144

This PR updates the pipeline to multidms==3.3.0, which is functionally equivalent to the previous version 0.2.1 (with some new features that are not utilized in this PR). This is simply a speedy patch such that the pandas version can be updated for the rest of the pipeline while we take a more careful look at potential changes that would be introduced by the new multidms 1.0.0. I ran the example data pipeline with pandas 2.2.2 and all results seem identical from a quick comparison of the milled notebooks.

jbloom commented 5 months ago

@jgallowa07, thanks so much for this. I pushed a few more commits that update CHANGELOG and a few other package versions and just add a test to make sure results are similar. I will merge once that passes.