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dms-vep / dms-vep-pipeline

Pipeline for analyzing deep mutational scanning (DMS) of viral entry proteins (VEPs)
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Store IC50s outside pickle file #167

Closed Bernadetadad closed 1 year ago

Bernadetadad commented 1 year ago

Would it be possible to store IC50/90 values somewhere outside pickle file as well. I want to use these for plotting ACE2 affinity correlations between various datasets but currently these are stored in .pickle files that are not tracked on github and since I'm working in a separate repo where I have several added other repos as submodules I can't access these unless I rerun the original repos again.

jbloom commented 1 year ago

Aren't these stored in files like this one?

https://github.com/dms-vep/dms-vep-pipeline/blob/main/test_example/results/antibody_escape/REGN10933_icXX_avg.csv

I think for this ACE2 analysis you should use IC50, not IC90.

jbloom commented 1 year ago

Closing this issue as we are now using dms-vep-pipeline-3 anyway.