A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clustering: alignWigToBed; )
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Too much reads were filtered by BisulfiteIncompleteConvReadsFilter #9
1163998 reads (83.28% of total) failing BisulfiteIncompleteConvReadsFilter
How can I retain these reads and call methylation without this filter.