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dnanexus-archive
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dx-cwl
Import and run CWL workflows on DNAnexus (alpha)
Apache License 2.0
13
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6
forks
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dx-cwl is not compatible with dependencies
#30
madetunj
opened
4 years ago
0
Support for Draft-2
#29
skchronicles
opened
5 years ago
0
Native Docker + 16.04
#28
geetduggal
opened
6 years ago
0
Quote command line arguments to handle spaces in paths
#27
chapmanb
closed
6 years ago
0
Fix support for bundled in dx-cwl compile-workflow
#26
yihchii
closed
6 years ago
0
strip_prefix: re-add file open for skip_downloads case
#25
chapmanb
closed
6 years ago
0
Update code to work with latest cwltool
#24
jsunny23
opened
6 years ago
1
Resync package index when initializing applet instance
#23
zaeleus
closed
6 years ago
0
Add flag for instance provider
#22
zaeleus
closed
6 years ago
1
Test output clobbering fix
#21
geetduggal
closed
6 years ago
3
Idential final path names overwriting each other during staging to cwloutputs
#20
chapmanb
opened
6 years ago
4
can use provided DNANexus instance when compile-tool
#19
hurchu
opened
6 years ago
3
remove samtools
#18
hurchu
closed
6 years ago
1
only use necessary images assets when building a single applet
#17
hurchu
closed
6 years ago
1
get help from cwl doc field when building applets
#16
hurchu
closed
6 years ago
0
Skip unnecessary downloads
#15
geetduggal
closed
6 years ago
0
Retrieve input/staging disk specifications
#14
chapmanb
closed
6 years ago
4
Remove m2 instances with hdds
#13
chapmanb
closed
6 years ago
0
Clean up compiler output and messaging
#12
geetduggal
opened
6 years ago
0
Direct lookup of files prefixed with projects
#11
chapmanb
closed
6 years ago
0
Use cwltool installed directly via pip
#10
chapmanb
closed
6 years ago
0
Clean up and colorize `dx-cwl` output
#9
geetduggal
opened
6 years ago
0
Fix archiving workflows
#8
geetduggal
closed
6 years ago
1
Ensure there are no implicit path dependencies in dx-cwl
#7
geetduggal
opened
6 years ago
0
Directly use cwltool repository now that user space Docker has been merged
#6
geetduggal
closed
6 years ago
1
Refactor code into modules
#5
geetduggal
opened
6 years ago
0
Create documentation describing CWL features supported
#4
geetduggal
opened
6 years ago
0
Incorporate integration test suite and link with CI
#3
geetduggal
opened
6 years ago
6
Relocatable, directory organization, cwltool sync
#2
chapmanb
closed
6 years ago
0
Support for Inline Javascript with Workflow Inputs
#1
geetduggal
closed
7 years ago
0