dnanexus-archive dx-cwl issues

dnanexus-archive / dx-cwl

Import and run CWL workflows on DNAnexus (alpha)

Apache License 2.0

13 stars 6 forks source link

issues

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dx-cwl is not compatible with dependencies

#30 madetunj opened 4 years ago
0
Support for Draft-2

#29 skchronicles opened 5 years ago
0
Native Docker + 16.04

#28 geetduggal opened 6 years ago
0
Quote command line arguments to handle spaces in paths

#27 chapmanb closed 6 years ago
0
Fix support for bundled in dx-cwl compile-workflow

#26 yihchii closed 6 years ago
0
strip_prefix: re-add file open for skip_downloads case

#25 chapmanb closed 6 years ago
0
Update code to work with latest cwltool

#24 jsunny23 opened 6 years ago
1
Resync package index when initializing applet instance

#23 zaeleus closed 6 years ago
0
Add flag for instance provider

#22 zaeleus closed 6 years ago
1
Test output clobbering fix

#21 geetduggal closed 6 years ago
3
Idential final path names overwriting each other during staging to cwloutputs

#20 chapmanb opened 6 years ago
4
can use provided DNANexus instance when compile-tool

#19 hurchu opened 6 years ago
3
remove samtools

#18 hurchu closed 6 years ago
1
only use necessary images assets when building a single applet

#17 hurchu closed 6 years ago
1
get help from cwl doc field when building applets

#16 hurchu closed 6 years ago
0
Skip unnecessary downloads

#15 geetduggal closed 6 years ago
0
Retrieve input/staging disk specifications

#14 chapmanb closed 6 years ago
4
Remove m2 instances with hdds

#13 chapmanb closed 6 years ago
0
Clean up compiler output and messaging

#12 geetduggal opened 7 years ago
0
Direct lookup of files prefixed with projects

#11 chapmanb closed 7 years ago
0
Use cwltool installed directly via pip

#10 chapmanb closed 7 years ago
0
Clean up and colorize `dx-cwl` output

#9 geetduggal opened 7 years ago
0
Fix archiving workflows

#8 geetduggal closed 7 years ago
1
Ensure there are no implicit path dependencies in dx-cwl

#7 geetduggal opened 7 years ago
0
Directly use cwltool repository now that user space Docker has been merged

#6 geetduggal closed 7 years ago
1
Refactor code into modules

#5 geetduggal opened 7 years ago
0
Create documentation describing CWL features supported

#4 geetduggal opened 7 years ago
0
Incorporate integration test suite and link with CI

#3 geetduggal opened 7 years ago
6
Relocatable, directory organization, cwltool sync

#2 chapmanb closed 7 years ago
0
Support for Inline Javascript with Workflow Inputs

#1 geetduggal closed 7 years ago
0