Question regarding using large WGS datasets

dnanexus-archive / parliament2

Runs a combination of tools to generate structural variant calls on whole-genome sequencing data

Apache License 2.0

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Question regarding using large WGS datasets #82

Open oalavijeh opened 5 years ago

oalavijeh commented 5 years ago

Hello,

I am interested in using parliament2 on a cohort of 1,500 WGS samples. Would the output from this be a merged vcf file or will I have to run each sample individually through parliament2?

Many thanks