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dnanexus-archive / parliament2

Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
Apache License 2.0
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Running Parliament2 on multiple WGS sammples #89

Open nitha26 opened 4 years ago

nitha26 commented 4 years ago

Hi Authors,

I had installed Parliament2 docker version in centos7 (centos-release-7-8.2003.0.el7.centos.x86_64) local machine to GermlineSV calling.

Could you give me an answer to bellow questions:

  1. How many inputs can be given for a single run. what is the maximum input can be used for running Parliament in a single run?
  2. If suppose I have to identify structural variation for >100 samples in a single stretch, how should I run. can I mention the input file as *.bam? How to run multiple samples in one go ?

please guide me on how to run multiple samples in Parliament2.

Thanks.