This PR adds in the demux / deplete + metagenomics-classification pipeline (named demux-plus pipeline) which also includes a CI test (which currently just ensures that the pipeline runs to completion without additional checks for figure of merits)
User Experience Improvement
This PR addresses a number of issues raised by users of the viral-ngs pipeline. Details of issues addressed can be found through references.
Metagenomics pipeline
This PR adds in the demux / deplete + metagenomics-classification pipeline (named
demux-pluspipeline) which also includes a CI test (which currently just ensures that the pipeline runs to completion without additional checks for figure of merits)User Experience Improvement
This PR addresses a number of issues raised by users of the viral-ngs pipeline. Details of issues addressed can be found through references.