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viral-ngs
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expose --major_cutoff in refine_assembly #48

Closed dpark01 closed 7 years ago

dpark01 commented 7 years ago

Expose the --major_cutoff parameter (it's relatively new in viral-ngs) in both of the refine1 and refine2 assembly steps. Default to null/not specified, but optionally some floating point value between 0 and 1.

mlin commented 7 years ago

@dpark01 updated the featured project with 4ef5a0c. If you set major_cutoff in the first refinement stage, by default the same setting will propagate to the second refinement stage (but they can be overridden separately)

dpark01 commented 7 years ago

Excellent thanks!