dnanexus-rnd / GLnexus

Scalable gVCF merging and joint variant calling for population sequencing projects
Apache License 2.0
145 stars 37 forks source link

RocksDB build issues with gcc 9 #192

Closed mlin closed 4 years ago

mlin commented 4 years ago

RocksDB hits compile errors with gcc 9, which can be worked around by adding -Wno-error=deprecated-copy -Wno-error=pessimizing-move to the RocksDB build flags in CMakeLists.txt. However, this then breaks earlier versions of gcc which don't understand those flags.

we're waiting for RocksDB to cut a release including https://github.com/facebook/rocksdb/commit/61876614dce8c9155e28d40b5d95ec1bf1cbfa47

mlin commented 4 years ago

RocksDB v6.4.6+ should cover this