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dnanexus-rnd / GLnexus

Scalable gVCF merging and joint variant calling for population sequencing projects
Apache License 2.0
145 stars 37 forks source link

Include alt allele trimming and full PLs to DeepVariant defaults. #196

Closed cmclean closed 4 years ago

cmclean commented 4 years ago

We definitely want the alt allele trimming enabled by default. more_PL is more debatable.