Open ghost opened 4 years ago
Removing the said vcf solves the issue ... so there seems to be something with that vcf file but I can't get it. It works fine with other tools.
Okay found it, 2 of the vcf files had the same sample name.
Maybe the error message, in such case, should tell the user something like "duplicate sample name in vcf files"?
cheers and thanks for GLnexus, really cool software.
Yes, the error message "sample is currently being added" could be clarified. It reflects an internal distinction in the code path, that not only is there a duplicate sample name, but the duplicate is currently being processed at the exact same moment by a different worker thread! Some luck is needed to hit that :laughing:
Hello, I am getting this error
I have no idea of what might be wrong, the vcf file looks all right to me. here is the vcf header
thank you
PS: here is the log