search

dnanexus-rnd / GLnexus

Scalable gVCF merging and joint variant calling for population sequencing projects
Apache License 2.0
142 stars 37 forks source link

container error #228

Open paniscusJr opened 4 years ago

paniscusJr commented 4 years ago

When I try to run glnexus_cli the container errors out with the same error when passing the data to the container and also when trying to run from within the container. Error: Illegal instruction (core dumped) root@c5e334faee93:/# glnexus_cli --config DeepVariant /in/.g.vcf.gz Illegal instruction (core dumped) docker run --rm -i -v $(pwd)/dv_1000G_ALDH2_gvcf:/in quay.io/mlin/glnexus:vX.Y.Z \ bash -c 'glnexus_cli --config DeepVariant /in/.g.vcf.gz' > dv_1000G_ALDH2.bcf I have also tried versions 1.26---1.1.12 and all resulted in the same error.

Please let me know if you have any thoughts on this error.

mlin commented 4 years ago

The executable is compiled for the Ivy Bridge instruction set, which was new in 2012-2014. Is the hardware of that vintage or even older?