Open Johnnywang92 opened 4 years ago
Hi, I infer you compiled GLnexus yourself, is that right? (congrats...)
tl;dr install libzstd-dev or equivalent and rebuild from scratch
RocksDB's configure scripts have a (regrettable imho) feature that detects which compression libraries are installed on the host, and enables only that set. So if Zstandard isn't already installed on the system, it compiles successfully but then fails at runtime when a program like GLnexus wants to use it.
I tried to merge the trios' gvcf files which generate by DeepVariant and the command and error message show like below:
./glnexus_cli --config DeepVariantWES --bed exon.bed HY20080095.gvcf HY20080096.gvcf HY20080097.gvcf
How to fix that? thanks for your time.